Research workbench
Structure of POMBC4, a periplasmic fragment of pomb from vibrio alginolyticus
Analyse Structure of POMBC4, a periplasmic fragment of pomb from vibrio alginolyticus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WPX
- Type
- protein
- Length
- 298 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pomb
- UniProt
- O06874
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pomb | protein | 149 | 39% helix, 19% strand | O06874 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.35 | 0.78 | 15 | empty |
| 2 | 57 | 0.34 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1043 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 3WPX · Structure of PomBc4, a periplasmic fragment of PomB from Vibrio alginolyticus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O06874
- Elsewhere: RCSB PDB 3WPX · PDBe 3WPX · UniProt O06874
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.