Research workbench
Crystal structure of the di-tetraheme cytochrome C3 from desulfovibrio gigas at 1.2 ångström resolution
Analyse Crystal structure of the di-tetraheme cytochrome C3 from desulfovibrio gigas at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GYO
- Type
- protein
- Length
- 212 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C3, a dimeric class III C-type cytochrome
- UniProt
- Q9R638
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cytochrome C3, a dimeric class III C-type cytochrome | protein | 106 | 21% helix, 10% strand | Q9R638 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1086 | 0.86 | 0.86 | 133 | HEC |
Interfaces
1 interface between chains.
- A–B · 666 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 cofactor, 2 disulfide (heme c attachment, disulfide).
Compared structures
- 1GYO · Crystal structure of the di-tetraheme cytochrome c3 from Desulfovibrio gigas at 1.2… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9R638
- Elsewhere: RCSB PDB 1GYO · PDBe 1GYO · UniProt Q9R638
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.