Research workbench
The structure of an anti-cancer lectin mytilec with ligand from the mussel mytilus galloprovincialis
Analyse The structure of an anti-cancer lectin mytilec with ligand from the mussel… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WMV
- Type
- protein
- Length
- 299 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin
- UniProt
- B3EWR1
- Ligands
- A2G
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lectin | protein | 150 | 6% helix, 43% strand | B3EWR1 |
| B | Lectin | protein | 149 | 6% helix, 44% strand | B3EWR1 |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 794 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3WMV · The structure of an anti-cancer lectin mytilec with ligand from the mussel Mytilus… · the same entry in another collection · chain A against A, TM-score 1.00
- B3EWR1 · AlphaFold monomer V2.0 prediction for lectin (B3EWR1) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3EWR1
- Elsewhere: RCSB PDB 3WMV · PDBe 3WMV · UniProt B3EWR1
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