Research workbench

The periplasmic PDZ tandem fragment of the rsep homologue from aquifex aeolicus

Analyse The periplasmic PDZ tandem fragment of the rsep homologue from aquifex aeolicus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3WKL
Type: protein
Length: 180 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative zinc metalloprotease AQ_1964
EC: 3.4.24.-
UniProt: O67776
Pockets: 1 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative zinc metalloprotease AQ_1964 (EC 3.4.24.-)	protein	180	21% helix, 36% strand	O67776

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.40	0.80	13	empty

Compared structures

3WKL · The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus · the same entry in another collection · chain A against A, TM-score 1.00
O67776 · AlphaFold monomer V2.0 prediction for putative zinc metalloprotease AQ_1964 (O67776) · a predicted model of the same protein · chain A against A, TM-score 0.63

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O67776
Elsewhere: RCSB PDB 3WKL · PDBe 3WKL · UniProt O67776

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.