Research workbench
Crystal structure of carbohydrate recognition domain of blood dendritic cell antigen-2 (BDCA2) lectin (crystal form-1)
Analyse Crystal structure of carbohydrate recognition domain of blood dendritic cell… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WBP
- Type
- protein
- Length
- 255 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C-type lectin domain family 4 member C
- UniProt
- Q8WTT0
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C-type lectin domain family 4 member C | protein | 128 | 16% helix, 34% strand | Q8WTT0 |
| B | C-type lectin domain family 4 member C | protein | 127 | 17% helix, 35% strand | Q8WTT0 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 2128 Ų buried · 38 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3WBP · Crystal structure of carbohydrate recognition domain of Blood Dendritic Cell Antigen-2… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8WTT0 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 4 member C (Q8WTT0) · a predicted model of the same protein · chain B against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WTT0
- Elsewhere: RCSB PDB 3WBP · PDBe 3WBP · UniProt Q8WTT0
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