Research workbench
Rice OS3BGLU6 E178Q with covalent glucosyl moiety from P-nitrophenyl glucopyranoside.
Analyse Rice OS3BGLU6 E178Q with covalent glucosyl moiety from P-nitrophenyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WBA
- Type
- protein
- Length
- 478 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glucosidase 6
- EC
- 3.2.1.21
- UniProt
- Q8L7J2
- Ligands
- GLC
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-glucosidase 6 (EC 3.2.1.21) | protein | 478 | 45% helix, 17% strand | Q8L7J2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 624 | 0.74 | 0.80 | 57 | GLC, GOL |
| 2 | 105 | 0.37 | 0.74 | 17 | empty |
| 3 | 70 | 0.35 | 0.77 | 19 | GOL |
Modifications
Observed in the structure: 1 disulfide, 1 glycan (disulfide, glycosylation).
Compared structures
- 3WBA · Rice Os3BGlu6 E178Q with Covalent Glucosyl Moiety from p-nitrophenyl glucopyranoside. · the same entry in another collection · chain A against A, TM-score 1.00
- Q8L7J2 · AlphaFold monomer V2.0 prediction for beta-glucosidase 6 (Q8L7J2) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8L7J2
- Elsewhere: RCSB PDB 3WBA · PDBe 3WBA · UniProt Q8L7J2
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