Research workbench
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (afaglb-L, O29867_ARCFU) from archaeoglobus fulgidus as a mbp fusion
Analyse Crystal structure of the C-terminal globular domain of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WAI
- Type
- protein
- Length
- 711 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding periplasmic protein, transmembrane oligosaccharyl transferase
- UniProt
- P0AEX9, O29867
- Pockets
- 8 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding periplasmic protein, transmembrane oligosaccharyl transferase | protein | 711 | 41% helix, 21% strand | P0AEX9, O29867 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 322 | 0.57 | 0.76 | 42 | empty |
| 2 | 290 | 0.57 | 0.76 | 27 | empty |
| 3 | 308 | 0.54 | 0.75 | 29 | empty |
| 4 | 212 | 0.53 | 0.78 | 26 | empty |
| 5 | 105 | 0.38 | 0.75 | 20 | empty |
Compared structures
- 3WAI · Crystal structure of the C-terminal globular domain of oligosaccharyltransferase… · the same entry in another collection · chain A against A, TM-score 1.00
- O29867 · AlphaFold monomer V2.0 prediction for dolichyl- phosphooligosaccharide-protein… · a predicted model of the same protein · chain A against A, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt O29867
- Elsewhere: RCSB PDB 3WAI · PDBe 3WAI · UniProt P0AEX9 · UniProt O29867
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