Research workbench
Crystal structure of binb: a receptor binding component of the binary toxin from lysinibacillus sphaericus
Analyse Crystal structure of binb: a receptor binding component of the binary toxin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3WA1
- Type
- protein
- Length
- 389 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Binb protein
- UniProt
- Q7B2I6
- Pockets
- 5 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Binb protein | protein | 389 | 13% helix, 41% strand | Q7B2I6 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 108 | 0.48 | 0.80 | 22 | empty |
| 2 | 67 | 0.42 | 0.81 | 18 | empty |
| 3 | 98 | 0.38 | 0.76 | 18 | empty |
| 4 | 51 | 0.27 | 0.75 | 11 | empty |
| 5 | 54 | 0.25 | 0.73 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3WA1 · Crystal structure of BinB: A receptor binding component of the binary toxin from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7B2I6
- Elsewhere: RCSB PDB 3WA1 · PDBe 3WA1 · UniProt Q7B2I6
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