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Bovine beta-lactoglobulin complexed with retinol, trigonal lattice Z

Analyse Bovine beta-lactoglobulin complexed with retinol, trigonal lattice Z in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1GX8
Type: protein
Length: 161 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-lactoglobulin
UniProt: P02754
Ligands: RTL
Pockets: 1 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-lactoglobulin	protein	161	13% helix, 40% strand	P02754

Ligands and binding sites

RTL · Retinol · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	204	0.67	0.85	26	RTL

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1GX8 · Bovine beta-lactoglobulin complexed with retinol, trigonal lattice Z · the same entry in another collection · chain A against A, TM-score 1.00
P02754 · AlphaFold monomer V2.0 prediction for beta-lactoglobulin (P02754) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02754
Elsewhere: RCSB PDB 1GX8 · PDBe 1GX8 · UniProt P02754

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