Research workbench
Crystal structure analysis of the synthetic GCN4 coiled coil peptide
Analyse Crystal structure analysis of the synthetic GCN4 coiled coil peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3W8V
- Type
- protein
- Length
- 96 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GCN4N coiled coil peptide
- Ligands
- TYZ
Structure
x-ray diffraction · 1 distinct chain · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | GCN4N coiled coil peptide | protein | 32 | 91% helix, 0% strand | — |
Ligands and binding sites
- TYZ · Para acetamido benzoic acid · ligand · 5 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–C · 737 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 737 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 678 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 covalent (covalent ligand).
Compared structures
- 3W8V · Crystal Structure Analysis of the synthetic GCN4 coiled coil peptide · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3W8V · PDBe 3W8V
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