Research workbench
Mamm-ctd D249A&H28A mutant
Analyse Mamm-ctd D249A&H28A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3W8P
- Type
- protein
- Length
- 181 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Magnetosome protein mamm
- UniProt
- Q6NE57
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Magnetosome protein mamm | protein | 91 | 36% helix, 35% strand | Q6NE57 |
| B | Magnetosome protein mamm | protein | 90 | 33% helix, 36% strand | Q6NE57 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 233 | 0.54 | 0.77 | 34 | empty |
Interfaces
1 interface between chains.
- A–B · 367 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (artifact).
Compared structures
- 3W8P · MamM-CTD D249A&H28A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NE57
- Elsewhere: RCSB PDB 3W8P · PDBe 3W8P · UniProt Q6NE57
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