Research workbench
Crystal structure of rsbx in complex with magnesium in space group P1
Analyse Crystal structure of rsbx in complex with magnesium in space group P1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3W40
- Type
- protein
- Length
- 398 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoserine phosphatase rsbx
- EC
- 3.1.3.3
- UniProt
- P17906
- Ligands
- MG
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phosphoserine phosphatase rsbx (EC 3.1.3.3) | protein | 199 | 23% helix, 37% strand | P17906 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 461 | 0.68 | 0.80 | 46 | empty |
| 2 | 191 | 0.49 | 0.76 | 32 | empty |
| 3 | 50 | 0.41 | 0.83 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 730 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 3W40 · Crystal structure of RsbX in complex with magnesium in space group P1 · the same entry in another collection · chain A against A, TM-score 1.00
- P17906 · AlphaFold monomer V2.0 prediction for phosphoserine phosphatase rsbx (P17906) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17906
- Elsewhere: RCSB PDB 3W40 · PDBe 3W40 · UniProt P17906
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