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Structure of vigna unguiculata chitinase with regulation activity of the plant cell wall
Analyse Structure of vigna unguiculata chitinase with regulation activity of the plant… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3W3E
- Type
- protein
- Length
- 484 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cotyledoneous yieldin-like protein
- UniProt
- Q8H0C9
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cotyledoneous yieldin-like protein | protein | 242 | 45% helix, 2% strand | Q8H0C9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 533 | 0.65 | 0.77 | 48 | empty |
| 2 | 137 | 0.43 | 0.76 | 24 | empty |
| 3 | 158 | 0.42 | 0.74 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 79 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3W3E · Structure of Vigna unguiculata chitinase with regulation activity of the plant cell wall · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8H0C9
- Elsewhere: RCSB PDB 3W3E · PDBe 3W3E · UniProt Q8H0C9
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