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Crystal structure of apo-type bacterial vanadium-dependent chloroperoxidase

Analyse Crystal structure of apo-type bacterial vanadium-dependent chloroperoxidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3W35
Type: protein
Length: 922 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NAPH1
EC: 1.11.1.10
UniProt: A7KH27
Pockets: 8 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 49% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NAPH1 (EC 1.11.1.10)	protein	459	50% helix, 8% strand	A7KH27
B	NAPH1 (EC 1.11.1.10)	protein	463	48% helix, 7% strand	A7KH27

Pockets

8 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	890	0.75	0.79	77	empty
2	484	0.74	0.82	39	empty
3	819	0.74	0.78	67	empty
4	601	0.72	0.79	53	empty
5	67	0.72	0.98	25	empty

Interfaces

1 interface between chains.

A–B · 2111 Å² buried · 30 hydrogen bonds · protein-protein

Compared structures

3W35 · Crystal structure of apo-type bacterial Vanadium-dependent chloroperoxidase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7KH27
Elsewhere: RCSB PDB 3W35 · PDBe 3W35 · UniProt A7KH27

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