Research workbench
Crystal structure of bxle from streptomyces thermoviolaceus opc-520
Analyse Crystal structure of bxle from streptomyces thermoviolaceus opc-520 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VXB
- Type
- protein
- Length
- 399 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative sugar-binding lipoprotein
- UniProt
- Q76BU9
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative sugar-binding lipoprotein | protein | 399 | 52% helix, 15% strand | Q76BU9 |
Ligands and binding sites
- GOL · Glycerol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 369 | 0.62 | 0.78 | 41 | GOL |
| 2 | 93 | 0.38 | 0.76 | 19 | empty |
Compared structures
- 3VXB · Crystal Structure of BxlE from Streptomyces thermoviolaceus OPC-520 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q76BU9
- Elsewhere: RCSB PDB 3VXB · PDBe 3VXB · UniProt Q76BU9
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