Research workbench
Crystal structure of capsular polysaccharide synthesizing enzyme cape from staphylococcus aureus in apo form
Analyse Crystal structure of capsular polysaccharide synthesizing enzyme cape from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VVB
- Type
- protein
- Length
- 270 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cape
- EC
- 4.2.1.115
- UniProt
- Q7A2Y4
- Ligands
- NAP
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cape (EC 4.2.1.115) | protein | 270 | 43% helix, 20% strand | Q7A2Y4 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 319 | 0.68 | 0.82 | 37 | NAP |
| 2 | 217 | 0.53 | 0.77 | 33 | empty |
| 3 | 88 | 0.42 | 0.79 | 20 | empty |
Compared structures
- 3VVB · Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE from Staphylococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7A2Y4
- Elsewhere: RCSB PDB 3VVB · PDBe 3VVB · UniProt Q7A2Y4
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