Research workbench
Structural insights into small RNA sorting and mRNA binding by arabidopsis ago domains
Analyse Structural insights into small RNA sorting and mRNA binding by arabidopsis ago… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VNB
- Type
- protein
- Length
- 149 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein argonaute 1
- UniProt
- O04379
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein argonaute 1 | protein | 149 | 48% helix, 18% strand | O04379 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 3VNB · Structural insights into small RNA sorting and mRNA binding by Arabidopsis Ago domains · the same entry in another collection · chain A against A, TM-score 1.00
- O04379 · AlphaFold monomer V2.0 prediction for protein argonaute 1 (O04379) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O04379
- Elsewhere: RCSB PDB 3VNB · PDBe 3VNB · UniProt O04379
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