Research workbench
Crystal structure of the DNA mimic protein DMP19
Analyse Crystal structure of the DNA mimic protein DMP19 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VJZ
- Type
- protein
- Length
- 327 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- Q9K0P4
- Pockets
- 4 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 77% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein | protein | 164 | 78% helix, 3% strand | Q9K0P4 |
| B | Putative uncharacterized protein | protein | 163 | 76% helix, 3% strand | Q9K0P4 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.44 | 0.79 | 17 | empty |
| 2 | 132 | 0.40 | 0.74 | 21 | empty |
| 3 | 92 | 0.37 | 0.75 | 26 | empty |
| 4 | 70 | 0.31 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1925 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 3VJZ · Crystal structure of the DNA mimic protein DMP19 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K0P4
- Elsewhere: RCSB PDB 3VJZ · PDBe 3VJZ · UniProt Q9K0P4
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