Research workbench

Crystal structure of ubz of human WRNIP1

Analyse Crystal structure of ubz of human WRNIP1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3VHS
Type: protein
Length: 51 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ATPase WRNIP1
UniProt: Q96S55
Ligands: ZN, NA

Structure

x-ray diffraction · 2 distinct chains · 35% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ATPase WRNIP1	protein	25	44% helix, 24% strand	Q96S55
B	ATPase WRNIP1	protein	26	27% helix, 23% strand	Q96S55

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B
NA · Sodium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 411 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3VHS · Crystal structure of UBZ of human WRNIP1 · the same entry in another collection · chain A against A, TM-score 1.00
Q96S55 · AlphaFold monomer V2.0 prediction for ATPase WRNIP1 (Q96S55) · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96S55
Elsewhere: RCSB PDB 3VHS · PDBe 3VHS · UniProt Q96S55

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.