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Crystal structure of capsular polysaccharide assembling protein capf from staphylococcus aureus in space group C2221

Analyse Crystal structure of capsular polysaccharide assembling protein capf from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3VHR
Type: protein
Length: 343 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsular polysaccharide synthesis enzyme CAP5F
UniProt: Q99X63
Ligands: ZN
Pockets: 3 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsular polysaccharide synthesis enzyme CAP5F	protein	343	27% helix, 31% strand	Q99X63

Ligands and binding sites

ZN · Zinc ion · metal · chains A
FMT · Formic acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	254	0.58	0.79	30	empty
2	66	0.40	0.79	19	FMT
3	141	0.39	0.73	28	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

3VHR · Crystal Structure of capsular polysaccharide assembling protein CapF from Staphylococcus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99X63
Elsewhere: RCSB PDB 3VHR · PDBe 3VHR · UniProt Q99X63

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