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Crystal structure of E. COLI ynce
Analyse Crystal structure of E. COLI ynce in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VGZ
- Type
- protein
- Length
- 1,286 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein ynce
- UniProt
- P76116
- Pockets
- 10 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 1% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | Uncharacterized protein ynce | protein | 321 | 0% helix, 55% strand | P76116 |
| C | Uncharacterized protein ynce | protein | 323 | 2% helix, 53% strand | P76116 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1017 | 0.78 | 0.80 | 86 | empty |
| 2 | 1169 | 0.77 | 0.79 | 110 | empty |
| 3 | 963 | 0.77 | 0.80 | 70 | empty |
| 4 | 1067 | 0.77 | 0.79 | 93 | empty |
| 5 | 193 | 0.57 | 0.80 | 36 | empty |
Interfaces
3 interfaces between chains.
- A–B · 719 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 712 Ų buried · 21 hydrogen bonds · protein-protein
- B–C · 505 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P76116
- Elsewhere: RCSB PDB 3VGZ · PDBe 3VGZ · UniProt P76116
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