Research workbench
Crystal structure of the GET5 carboxyl domain from S. cerevisiae
Analyse Crystal structure of the GET5 carboxyl domain from S. cerevisiae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VEJ
- Type
- protein
- Length
- 81 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin-like protein MDY2
- UniProt
- Q12285
- Ligands
- PO4
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin-like protein MDY2 | protein | 40 | 70% helix, 0% strand | Q12285 |
| B | Ubiquitin-like protein MDY2 | protein | 41 | 68% helix, 0% strand | Q12285 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 914 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3VEJ · Crystal structure of the Get5 carboxyl domain from S. cerevisiae · the same entry in another collection · chain A against A, TM-score 1.00
- Q12285 · AlphaFold monomer V2.0 prediction for ubiquitin-like protein MDY2 (Q12285) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12285
- Elsewhere: RCSB PDB 3VEJ · PDBe 3VEJ · UniProt Q12285
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