Research workbench
Crystal structure of circumsporozoite protein atsr domain, P43212 form
Analyse Crystal structure of circumsporozoite protein atsr domain, P43212 form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VDL
- Type
- protein
- Length
- 213 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Circumsporozoite (cs) protein
- UniProt
- Q7K740
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Circumsporozoite (cs) protein | protein | 71 | 28% helix, 20% strand | Q7K740 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 757 | 0.78 | 0.82 | 84 | empty |
Interfaces
3 interfaces between chains.
- A–B · 841 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 806 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 772 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3VDL · Crystal structure of circumsporozoite protein aTSR domain, P43212 form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7K740
- Elsewhere: RCSB PDB 3VDL · PDBe 3VDL · UniProt Q7K740
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