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Crystal structure of enolase MSMEG_6132 (target efi-502282) from mycobacterium smegmatis str. MC2 155 complexed with formate and acetate

Analyse Crystal structure of enolase MSMEG_6132 (target efi-502282) from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3VDG
Type: protein
Length: 424 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable glucarate dehydratase
UniProt: A0R5B5
Ligands: NA, CL
Pockets: 3 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable glucarate dehydratase	protein	424	40% helix, 18% strand	A0R5B5

Ligands and binding sites

NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · chains A
FMT · Formic acid · additive · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.69	0.97	18	empty
2	60	0.30	0.75	16	empty
3	57	0.27	0.74	19	empty

Compared structures

3VDG · Crystal structure of enolase MSMEG_6132 (TARGET EFI-502282) from Mycobacterium smegmatis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0R5B5
Elsewhere: RCSB PDB 3VDG · PDBe 3VDG · UniProt A0R5B5

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