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Crystal structure of enolase FG03645.1 (target efi-502278) from gibberella zeae pH-1 complexed with magnesium, formate and sulfate

Analyse Crystal structure of enolase FG03645.1 (target efi-502278) from gibberella zeae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3VA8
Type: protein
Length: 427 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable dehydratase
Ligands: MG, SO4
Pockets: 4 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable dehydratase	protein	427	40% helix, 19% strand	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A
SO4 · Sulfate ion · ion · chains A
FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.71	0.98	19	empty
2	75	0.41	0.80	17	empty
3	75	0.37	0.77	21	empty
4	81	0.36	0.76	22	empty

Compared structures

3VA8 · Crystal structure of enolase FG03645.1 (target EFI-502278) from Gibberella zeae PH-1… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3VA8 · PDBe 3VA8

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