Research workbench
Crystal structure of putative orotidine 5'-phosphate decarboxylase from streptomyces avermitilis ma-4680
Analyse Crystal structure of putative orotidine 5'-phosphate decarboxylase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3V75
- Type
- protein
- Length
- 285 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orotidine 5'-phosphate decarboxylase
- EC
- 4.1.1.23
- UniProt
- Q827Q5
- Pockets
- 3 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) | protein | 285 | 48% helix, 15% strand | Q827Q5 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.42 | 0.79 | 16 | empty |
| 2 | 95 | 0.34 | 0.73 | 26 | empty |
| 3 | 66 | 0.32 | 0.75 | 14 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3V75 · Crystal structure of putative orotidine 5'-phosphate decarboxylase from Streptomyces… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q827Q5
- Elsewhere: RCSB PDB 3V75 · PDBe 3V75 · UniProt Q827Q5
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