Research workbench
Crystal structure of transcriptional regulator
Analyse Crystal structure of transcriptional regulator in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3V6G
- Type
- protein
- Length
- 344 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable transcriptional regulatory protein (probably deor- family)
- UniProt
- P95092
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Probable transcriptional regulatory protein (probably deor- family) | protein | 172 | 82% helix, 0% strand | P95092 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.73 | 0.96 | 16 | empty |
| 2 | 97 | 0.73 | 0.95 | 15 | empty |
| 3 | 56 | 0.60 | 0.92 | 20 | empty |
| 4 | 60 | 0.53 | 0.87 | 14 | empty |
| 5 | 55 | 0.26 | 0.73 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1783 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
- 3V6G · Crystal Structure of Transcriptional Regulator · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P95092
- Elsewhere: RCSB PDB 3V6G · PDBe 3V6G · UniProt P95092
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