Research workbench
Crystal structure of a type VI secretion system effector from yersinia pestis
Analyse Crystal structure of a type VI secretion system effector from yersinia pestis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3V4H
- Type
- protein
- Length
- 260 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q8CLE0
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 131 | 8% helix, 56% strand | Q8CLE0 |
| B | Hypothetical protein | protein | 129 | 8% helix, 56% strand | Q8CLE0 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.29 | 0.75 | 9 | empty |
Interfaces
1 interface between chains.
- A–B · 1031 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 3V4H · Crystal structure of a type VI secretion system effector from Yersinia pestis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8CLE0
- Elsewhere: RCSB PDB 3V4H · PDBe 3V4H · UniProt Q8CLE0
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