Research workbench
Complex of bovine odorant binding protein with undecanal
Analyse Complex of bovine odorant binding protein with undecanal in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GT4
- Type
- protein
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Odorant-binding protein
- UniProt
- P07435
- Ligands
- UNA
- Pockets
- 6 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Odorant-binding protein | protein | 159 | 14% helix, 47% strand | P07435 |
| B | Odorant-binding protein | protein | 155 | 19% helix, 48% strand | P07435 |
Ligands and binding sites
- UNA · Undecanal · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.83 | 0.99 | 23 | UNA |
| 2 | 129 | 0.82 | 0.99 | 24 | UNA |
| 3 | 203 | 0.68 | 0.86 | 30 | empty |
| 4 | 55 | 0.44 | 0.84 | 14 | empty |
| 5 | 129 | 0.39 | 0.74 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 2473 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07435
- Elsewhere: RCSB PDB 1GT4 · PDBe 1GT4 · UniProt P07435
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