Research workbench
Crystal structure of uvra
Analyse Crystal structure of uvra in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UX8
- Type
- protein
- Length
- 564 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Excinuclease ABC, a subunit
- UniProt
- E8SW61
- Ligands
- ADP, ZN
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Excinuclease ABC, a subunit | protein | 564 | 40% helix, 18% strand | E8SW61 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.79 | 0.93 | 42 | empty |
| 2 | 722 | 0.69 | 0.77 | 73 | ADP |
| 3 | 59 | 0.32 | 0.76 | 14 | empty |
| 4 | 66 | 0.31 | 0.75 | 13 | empty |
Compared structures
- 3UX8 · Crystal structure of UvrA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E8SW61
- Elsewhere: RCSB PDB 3UX8 · PDBe 3UX8 · UniProt E8SW61
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