Research workbench
Structural characterization of adeno-associated virus serotype 9
Analyse Structural characterization of adeno-associated virus serotype 9 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UX1
- Type
- protein
- Length
- 518 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein VP1
- UniProt
- Q6JC40
- Pockets
- 6 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein VP1 | protein | 518 | 7% helix, 34% strand | Q6JC40 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 459 | 0.60 | 0.75 | 57 | empty |
| 2 | 319 | 0.57 | 0.76 | 41 | empty |
| 3 | 102 | 0.44 | 0.78 | 21 | empty |
| 4 | 141 | 0.40 | 0.73 | 24 | empty |
| 5 | 57 | 0.32 | 0.77 | 21 | empty |
Compared structures
- 3UX1 · Structural Characterization of Adeno-Associated Virus Serotype 9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6JC40
- Elsewhere: RCSB PDB 3UX1 · PDBe 3UX1 · UniProt Q6JC40
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