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2.9 ångström crystal structure of ornithine carbamoyltransferase (argf) from vibrio vulnificus

Analyse 2.9 ångström crystal structure of ornithine carbamoyltransferase (argf) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3UPD
Type: protein
Length: 346 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ornithine carbamoyltransferase
EC: 2.1.3.3
UniProt: Q8DCF5
Pockets: 3 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ornithine carbamoyltransferase (EC 2.1.3.3)	protein	346	49% helix, 14% strand	Q8DCF5

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	247	0.50	0.75	28	empty
2	78	0.37	0.77	17	empty
3	107	0.35	0.73	21	empty

Compared structures

3UPD · 2.9 Angstrom Crystal Structure of Ornithine Carbamoyltransferase (ArgF) from Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00
Q8DCF5 · AlphaFold monomer V2.0 prediction for ornithine carbamoyltransferase (Q8DCF5) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DCF5
Elsewhere: RCSB PDB 3UPD · PDBe 3UPD · UniProt Q8DCF5

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