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Crystal structure of a putative cell adhesion protein (BACOVA_04078) from bacteroides ovatus atcc 8483 at 2.80 a resolution

Analyse Crystal structure of a putative cell adhesion protein (BACOVA_04078) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3UP6
Type: protein
Length: 646 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein BACOVA_04078
UniProt: A7M1U4
Pockets: 6 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein BACOVA_04078	protein	322	7% helix, 50% strand	A7M1U4
B	Hypothetical protein BACOVA_04078	protein	324	6% helix, 49% strand	A7M1U4

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	961	0.71	0.76	78	empty
2	77	0.44	0.81	20	empty
3	85	0.41	0.78	13	empty
4	57	0.39	0.81	12	empty
5	50	0.30	0.76	16	empty

Interfaces

1 interface between chains.

A–B · 203 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 14 modified (engineered).

Compared structures

3UP6 · Crystal structure of a putative cell adhesion protein (BACOVA_04078) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7M1U4
Elsewhere: RCSB PDB 3UP6 · PDBe 3UP6 · UniProt A7M1U4

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