Research workbench
Crystal structure of putative alcohol dehydrogenase from sinorhizobium meliloti 1021
Analyse Crystal structure of putative alcohol dehydrogenase from sinorhizobium meliloti… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UOG
- Type
- protein
- Length
- 682 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alcohol dehydrogenase
- EC
- 1.1.1.1
- UniProt
- Q92MZ8
- Ligands
- SO4
- Pockets
- 6 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alcohol dehydrogenase (EC 1.1.1.1) | protein | 341 | 29% helix, 29% strand | Q92MZ8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 591 | 0.77 | 0.83 | 64 | SO4 |
| 2 | 584 | 0.76 | 0.82 | 61 | SO4 |
| 3 | 300 | 0.53 | 0.74 | 54 | empty |
| 4 | 67 | 0.41 | 0.80 | 20 | empty |
| 5 | 50 | 0.39 | 0.81 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 2001 Ų buried · 42 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3UOG · Crystal structure of putative Alcohol dehydrogenase from Sinorhizobium meliloti 1021 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92MZ8
- Elsewhere: RCSB PDB 3UOG · PDBe 3UOG · UniProt Q92MZ8
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