Research workbench

Crystal structure of extracellular ligand-binding receptor from rhodopseudomonas palustris HAA2

Analyse Crystal structure of extracellular ligand-binding receptor from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3UKJ
Type: protein
Length: 357 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Extracellular ligand-binding receptor
UniProt: Q2IU40
Ligands: ENO, PR
Pockets: 3 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Extracellular ligand-binding receptor	protein	357	47% helix, 20% strand	Q2IU40

Ligands and binding sites

ENO · 3-(4-hydroxy-phenyl)pyruvic acid · ligand · chains A
PR · Praseodymium ion · metal · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.38	0.80	22	empty
2	52	0.35	0.79	15	empty
3	50	0.27	0.74	15	empty

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3UKJ · Crystal structure of extracellular ligand-binding receptor from Rhodopseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2IU40
Elsewhere: RCSB PDB 3UKJ · PDBe 3UKJ · UniProt Q2IU40

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.