Research workbench
Crystal structure of C205S mutant and saccharopine dehydrogenase from saccharomyces cerevisiae.
Analyse Crystal structure of C205S mutant and saccharopine dehydrogenase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UGK
- Type
- protein
- Length
- 372 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Saccharopine dehydrogenase [NAD+, L-lysine-forming]
- EC
- 1.5.1.7
- UniProt
- P38998
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC 1.5.1.7) | protein | 372 | 38% helix, 13% strand | P38998 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 392 | 0.58 | 0.75 | 36 | empty |
| 2 | 108 | 0.45 | 0.79 | 20 | empty |
Compared structures
- 3UGK · Crystal Structure of C205S mutant and Saccharopine Dehydrogenase from Saccharomyces… · the same entry in another collection · chain A against A, TM-score 1.00
- P38998 · AlphaFold monomer V2.0 prediction for saccharopine dehydrogenase [NAD(+)… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38998
- Elsewhere: RCSB PDB 3UGK · PDBe 3UGK · UniProt P38998
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