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Refinement of haemophilus influenzae diaminopimelate epimerase at 1.7A

Analyse Refinement of haemophilus influenzae diaminopimelate epimerase at 1.7A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1GQZ
Type: protein
Length: 274 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Diaminopimelate epimerase
EC: 5.1.1.7
UniProt: P44859
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Diaminopimelate epimerase (EC 5.1.1.7)	protein	274	16% helix, 39% strand	P44859

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	173	0.64	0.85	39	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1GQZ · Refinement of Haemophilus influenzae Diaminopimelate epimerase at 1.7A · the same entry in another collection · chain A against A, TM-score 1.00
P44859 · AlphaFold monomer V2.0 prediction for diaminopimelate epimerase (P44859) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P44859
Elsewhere: RCSB PDB 1GQZ · PDBe 1GQZ · UniProt P44859

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