Research workbench
Crystal structure of yscq-C from yersinia pseudotuberculosis
Analyse Crystal structure of yscq-C from yersinia pseudotuberculosis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UEP
- Type
- protein
- Length
- 170 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yscq-C, type III secretion protein
- UniProt
- P40296
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Yscq-C, type III secretion protein | protein | 85 | 11% helix, 52% strand | P40296 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.34 | 0.77 | 10 | empty |
| 2 | 54 | 0.29 | 0.75 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 2254 Ų buried · 43 hydrogen bonds · protein-protein
Compared structures
- 3UEP · Crystal structure of YscQ-C from Yersinia pseudotuberculosis · the same entry in another collection · chain A against A, TM-score 1.00
- P40296 · AlphaFold monomer V2.0 prediction for yop proteins translocation protein Q (P40296) · a predicted model of the same protein · chain A against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40296
- Elsewhere: RCSB PDB 3UEP · PDBe 3UEP · UniProt P40296
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