Research workbench
Crystal structure of TON_0450 from thermococcus onnurineus NA1
Analyse Crystal structure of TON_0450 from thermococcus onnurineus NA1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UEB
- Type
- protein
- Length
- 610 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- B6YTZ3
- Pockets
- 5 · best druggability 0.61
Structure
x-ray diffraction · 6 distinct chains · 47% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein | protein | 102 | 49% helix, 25% strand | B6YTZ3 |
| B | Putative uncharacterized protein | protein | 102 | 42% helix, 28% strand | B6YTZ3 |
| C | Putative uncharacterized protein | protein | 103 | 47% helix, 28% strand | B6YTZ3 |
| D | Putative uncharacterized protein | protein | 99 | 48% helix, 24% strand | B6YTZ3 |
| E | Putative uncharacterized protein | protein | 104 | 47% helix, 25% strand | B6YTZ3 |
| F | Putative uncharacterized protein | protein | 100 | 49% helix, 28% strand | B6YTZ3 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 331 | 0.61 | 0.78 | 28 | empty |
| 2 | 293 | 0.55 | 0.76 | 41 | empty |
| 3 | 207 | 0.43 | 0.72 | 28 | empty |
| 4 | 129 | 0.42 | 0.76 | 23 | empty |
| 5 | 65 | 0.31 | 0.75 | 19 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1241 Ų buried · 24 hydrogen bonds · protein-protein
- C–D · 1144 Ų buried · 34 hydrogen bonds · protein-protein
- E–F · 1144 Ų buried · 31 hydrogen bonds · protein-protein
- B–C · 711 Ų buried · 6 hydrogen bonds · protein-protein
- D–E · 89 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3UEB · Crystal structure of TON_0450 from Thermococcus onnurineus NA1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6YTZ3
- Elsewhere: RCSB PDB 3UEB · PDBe 3UEB · UniProt B6YTZ3
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