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Crystal structure of the lipoprotein jlpa

Analyse Crystal structure of the lipoprotein jlpa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3UAU
Type: protein
Length: 685 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Surface-exposed lipoprotein
UniProt: A1VZX2
Pockets: 10 · best druggability 0.62

Structure

x-ray diffraction · 2 distinct chains · 39% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Surface-exposed lipoprotein	protein	344	39% helix, 34% strand	A1VZX2
B	Surface-exposed lipoprotein	protein	341	39% helix, 36% strand	A1VZX2

Pockets

10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	419	0.62	0.77	48	empty
2	320	0.58	0.76	35	empty
3	326	0.58	0.76	36	empty
4	104	0.49	0.80	14	empty
5	147	0.48	0.77	22	empty

Interfaces

1 interface between chains.

A–B · 757 Å² buried · 17 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

3UAU · Crystal structure of the lipoprotein JlpA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A1VZX2
Elsewhere: RCSB PDB 3UAU · PDBe 3UAU · UniProt A1VZX2

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