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1.60 ångström resolution crystal structure of a 3-dehydroquinate dehydratase-like protein from bifidobacterium longum
Analyse 1.60 ångström resolution crystal structure of a 3-dehydroquinate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3U80
- Type
- protein
- Length
- 250 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-dehydroquinate dehydratase, type II
- UniProt
- D6ZTY6
- Pockets
- 2 · best druggability 0.36
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-dehydroquinate dehydratase, type II | protein | 127 | 44% helix, 21% strand | D6ZTY6 |
| B | 3-dehydroquinate dehydratase, type II | protein | 123 | 46% helix, 22% strand | D6ZTY6 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 125 | 0.36 | 0.73 | 23 | empty |
| 2 | 78 | 0.35 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 658 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3U80 · 1.60 Angstrom Resolution Crystal Structure of a 3-Dehydroquinate Dehydratase-like Protein… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6ZTY6
- Elsewhere: RCSB PDB 3U80 · PDBe 3U80 · UniProt D6ZTY6
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