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Crystal structure of the C-terminal DUF1608 domain of the methanosarcina acetivorans S-layer (MA0829) protein

Analyse Crystal structure of the C-terminal DUF1608 domain of the methanosarcina… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3U2H
Type: protein
Length: 256 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: S-layer protein MA0829
UniProt: Q8TSG7
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	S-layer protein MA0829	protein	256	2% helix, 59% strand	Q8TSG7

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.35	0.75	16	empty

Compared structures

3U2H · Crystal structure of the C-terminal DUF1608 domain of the Methanosarcina acetivorans… · the same entry in another collection · chain A against A, TM-score 1.00
Q8TSG7 · AlphaFold monomer V2.0 prediction for major S-layer protein (Q8TSG7) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8TSG7
Elsewhere: RCSB PDB 3U2H · PDBe 3U2H · UniProt Q8TSG7

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