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Crystal structure of ADP-ribosyltransferase HOPU1 of pseudomonas syringae pv. tomato DC3000

Analyse Crystal structure of ADP-ribosyltransferase HOPU1 of pseudomonas syringae pv.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3U0J
Type: protein
Length: 468 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type III effector HOPU1
UniProt: Q88A91
Pockets: 6 · best druggability 0.68

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Type III effector HOPU1	protein	236	40% helix, 23% strand	Q88A91
A	Type III effector HOPU1	protein	232	41% helix, 26% strand	Q88A91

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	351	0.68	0.82	34	empty
2	374	0.60	0.77	40	empty
3	284	0.58	0.78	27	empty
4	130	0.41	0.75	15	empty
5	110	0.40	0.76	16	empty

Interfaces

1 interface between chains.

B–A · 475 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

3U0J · Crystal structure of ADP-ribosyltransferase HopU1 of Pseudomonas syringae pv. Tomato… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88A91
Elsewhere: RCSB PDB 3U0J · PDBe 3U0J · UniProt Q88A91

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