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Crystal structure of a porin-like protein (BVU_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution

Analyse Crystal structure of a porin-like protein (BVU_2266) from bacteroides vulgatus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TZG
Type: protein
Length: 474 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein BVU_2266
UniProt: A6L2L1
Pockets: 7 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein BVU_2266	protein	239	6% helix, 59% strand	A6L2L1
B	Hypothetical protein BVU_2266	protein	235	6% helix, 59% strand	A6L2L1

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	519	0.71	0.80	58	empty
2	249	0.54	0.76	41	empty
3	229	0.49	0.74	30	empty
4	98	0.45	0.80	20	empty
5	109	0.43	0.77	17	empty

Interfaces

1 interface between chains.

A–B · 759 Å² buried · 15 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3TZG · Crystal structure of a porin-like protein (BVU_2266) from Bacteroides vulgatus ATCC 8482… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6L2L1
Elsewhere: RCSB PDB 3TZG · PDBe 3TZG · UniProt A6L2L1

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