Research workbench
Structure of a probable 6-phosphogluconolactonase from mycobacterium abscessus
Analyse Structure of a probable 6-phosphogluconolactonase from mycobacterium abscessus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TX2
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable 6-phosphogluconolactonase
- UniProt
- B1MC71
- Ligands
- BEZ, NA
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable 6-phosphogluconolactonase | protein | 247 | 37% helix, 19% strand | B1MC71 |
Ligands and binding sites
- BEZ · Benzoic acid · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.43 | 0.78 | 25 | empty |
| 2 | 66 | 0.30 | 0.74 | 13 | BEZ |
Compared structures
- 3TX2 · Structure of a Probable 6-phosphogluconolactonase from Mycobacterium abscessus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1MC71
- Elsewhere: RCSB PDB 3TX2 · PDBe 3TX2 · UniProt B1MC71
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