Research workbench
Structure of the spoiiq-spoiiiah pore forming complex.
Analyse Structure of the spoiiq-spoiiiah pore forming complex. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TUF
- Type
- protein
- Length
- 273 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Stage III sporulation protein ah; Stage II sporulation protein Q
- UniProt
- P49785, P71044
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Stage III sporulation protein ah | protein | 115 | 58% helix, 16% strand | P49785 |
| B | Stage II sporulation protein Q | protein | 158 | 12% helix, 44% strand | P71044 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.44 | 0.77 | 26 | empty |
| 2 | 98 | 0.37 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 835 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 3TUF · Structure of the SpoIIQ-SpoIIIAH pore forming complex. · the same entry in another collection · chain A against A, TM-score 1.00
- P71044 · AlphaFold monomer V2.0 prediction for stage II sporulation protein Q (P71044) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P49785 · AlphaFold monomer V2.0 prediction for stage III sporulation protein ah (P49785) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49785
- Every structure of UniProt P71044
- Elsewhere: RCSB PDB 3TUF · PDBe 3TUF · UniProt P49785 · UniProt P71044
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