Research workbench
Monomeric lys-49 phospholipase A2 homologue isolated from the venom of cerrophidion (bothrops) godmani
Analyse Monomeric lys-49 phospholipase A2 homologue isolated from the venom of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GOD
- Type
- protein
- Length
- 121 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (phospholipase A2)
- EC
- 3.1.1.4
- UniProt
- P81165
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (phospholipase A2) (EC 3.1.1.4) | protein | 121 | 41% helix, 3% strand | P81165 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.61 | 0.80 | 25 | empty |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 1GOD · Monomeric lys-49 phospholipase A2 homologue isolated from the venom of cerrophidion… · the same entry in another collection · chain A against A, TM-score 1.00
- P81165 · AlphaFold monomer V2.0 prediction for basic phospholipase A2 homolog godmt-II (P81165) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81165
- Elsewhere: RCSB PDB 1GOD · PDBe 1GOD · UniProt P81165
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