Research workbench
Structure of HBPA2 from haemophilus parasuis
Analyse Structure of HBPA2 from haemophilus parasuis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TPA
- Type
- protein
- Length
- 507 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heme-binding protein a
- UniProt
- B0QSS4
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heme-binding protein a | protein | 507 | 32% helix, 22% strand | B0QSS4 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 766 | 0.74 | 0.79 | 67 | empty |
| 2 | 247 | 0.73 | 0.87 | 39 | empty |
| 3 | 180 | 0.55 | 0.80 | 25 | empty |
| 4 | 159 | 0.47 | 0.76 | 20 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3TPA · Structure of HbpA2 from Haemophilus parasuis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0QSS4
- Elsewhere: RCSB PDB 3TPA · PDBe 3TPA · UniProt B0QSS4
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