Research workbench

Chey from thermotoga maritima (mn-III)

Analyse Chey from thermotoga maritima (mn-III) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TMY
Type: protein
Length: 236 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chey protein
UniProt: Q56312
Ligands: MN
Pockets: 1 · best druggability 0.25

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Chey protein	protein	118	47% helix, 23% strand	Q56312

Ligands and binding sites

MN · Manganese (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.25	0.72	13	empty

Interfaces

1 interface between chains.

A–B · 147 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

3TMY · Chey from thermotoga maritima (mn-III) · the same entry in another collection · chain A against A, TM-score 1.00
Q56312 · AlphaFold monomer V2.0 prediction for chemotaxis protein chey (Q56312) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q56312
Elsewhere: RCSB PDB 3TMY · PDBe 3TMY · UniProt Q56312

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