Research workbench
Lectin I-B4 from griffonia simplicifolia (gs I-B4)METAL free form
Analyse Lectin I-B4 from griffonia simplicifolia (gs I-B4)METAL free form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GNZ
- Type
- protein
- Length
- 236 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gsi-B4 isolectin
- UniProt
- Q8W1R6
- Ligands
- NAG, PO4
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gsi-B4 isolectin | protein | 236 | 6% helix, 46% strand | Q8W1R6 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 glycan (N-glycosylation).
Compared structures
- 1GNZ · Lectin I-B4 from griffonia simplicifolia (gs I-B4)METAL free form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8W1R6
- Elsewhere: RCSB PDB 1GNZ · PDBe 1GNZ · UniProt Q8W1R6
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